There were plays deleted, including his 41 yard TD. I know because I watched the game. You can also see the play on almost every Kupp highlight tape. I'll prove it here:
View: https://www.youtube.com/watch?v=AWZLQSBeV40
Go to 1:03. You see #21 (Marcus Peters) and #20 (Kevin King) as Kupp catches his 41 yard TD. Peters had primary coverage on the play. King was the safety.
That means that Kupp had 2 catches for 48 yards and 2 TDs on Peters, 1 catch for 27 yards and 1 TD on Baker, and 1 catch for 12-15 yards on King. That's 4 catches for 87+ yards and 3 TDs against 3 top 40 picks. There might have been more. That's just what I recall.